Create Random Protein Fluctuations with Blender - Revision history

Mol: /* Theory */

2024-01-26T13:37:13Z

Theory

← Older revision		Revision as of 16:37, 26 January 2024
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	Protein backbone: Amide linkages -N(H)-C(O)- . Proteins fold and twist. Primary, secondary and tertiary structures.		Protein backbone: Amide linkages -N(H)-C(O)- . Proteins fold and twist. Primary, secondary and tertiary structures.

			Protein folding: Denaturation of proteins is a process of transition from a folded to an unfolded state.

	== Python ==		== Python ==

Mol: /* Python */

2024-01-26T13:35:51Z

Python

← Older revision		Revision as of 16:35, 26 January 2024
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	== Python ==		== Python ==

			Biopython package https://biopython.org/wiki/Documentation

	== Blender ==		== Blender ==

	== References ==		== References ==

Mol: /* Theory */

2024-01-26T13:35:33Z

Theory

← Older revision		Revision as of 16:35, 26 January 2024
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	The protein structure can be found from PDB, protein database. Many programs can download directly from PDBs but you can also download by hand.		The protein structure can be found from PDB, protein database. Many programs can download directly from PDBs but you can also download by hand.

	We wish to create random fluctuations, but still having some physical reasoning; eg. hydrophobic parts repel each other. A [https://en.wikipedia.org/wiki/Random_coil random coil] is a conformation of polymers where the monomers are oriented randomly while still being bonded to adjacent units [Wikipedia], thus it is not one specific shape, but a statistical distribution of shapes.		We wish to create random fluctuations, but still having some physical reasoning; eg. hydrophobic parts repel each other. A [https://en.wikipedia.org/wiki/Random_coil random coil] is a conformation of polymers where the monomers are oriented randomly while still being bonded to adjacent units [Wikipedia], thus it is not one specific shape, but a statistical distribution of shapes. Entropy effect.

	Protein backbone: Amide linkages -N(H)-C(O)- . Proteins fold and twist. Primary, secondary and tertiary structures.		Protein backbone: Amide linkages -N(H)-C(O)- . Proteins fold and twist. Primary, secondary and tertiary structures.

	== Python ==		== Python ==

Mol: Created page with "== Introduction == == Theory == The protein structure can be found from PDB, protein database. Many programs can download directly from PDBs but you can also download by hand. We wish to create random fluctuations, but still having some physical reasoning; eg. hydrophobic parts repel each other. A [https://en.wikipedia.org/wiki/Random_coil random coil] is a conformation of polymers where the monomers are oriented randomly while still being bonded to adjacent units [..."

2024-01-26T13:32:25Z

Created page with "== Introduction == == Theory == The protein structure can be found from PDB, protein database. Many programs can download directly from PDBs but you can also download by hand. We wish to create random fluctuations, but still having some physical reasoning; eg. hydrophobic parts repel each other. A [https://en.wikipedia.org/wiki/Random_coil random coil] is a conformation of polymers where the monomers are oriented randomly while still being bonded to adjacent units [..."

New page

== Introduction ==

== Theory ==

The protein structure can be found from PDB, protein database. Many programs can download directly from PDBs but you can also download by hand.

We wish to create random fluctuations, but still having some physical reasoning; eg. hydrophobic parts repel each other. A [https://en.wikipedia.org/wiki/Random_coil random coil] is a conformation of polymers where the monomers are oriented randomly while still being bonded to adjacent units [Wikipedia], thus it is not one specific shape, but a statistical distribution of shapes.

Protein backbone: Amide linkages -N(H)-C(O)- . Proteins fold and twist. Primary, secondary and tertiary structures.

== Python ==

== Blender ==

== References ==